miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|167019828|gb|CU396118.1|CU396118 CGGCCGGGGGAGATGGTGGGAGCAGAATGGCAACCTCATTCCTTCCCGCTGCAAACCCCCTGTTCCTCCCCTGCTCTTCC
TCTTCCTCTTCTTCAACTTCTTCATTGTCACCAGCCACATTTAATCCCCGCAAGAACCACTTGAGGAGCAACATCACTAC
CTGCAAGGCATTGAGCGATCCGCCCATTGCACCGGCGAGCAGGAGAGGCCTTGCCATTTCTCTCGTGACCACTTCCTTCC
TTTTCTCTTTGGGAGGGGGAGAGAAATCGGGTGGTGCCAATGCAGCTATTCTTGAGGCTGATGATGATGTGGAGCTCCTG
GAGAAGGTGAAGAAGGACAGGAAGAAGAGGCTGGAGAGGCAAGGGATCATCAATTCATCCAAAACTGAAAAGGGATATTT
GCAAGATCTCGTGTACAAACTGAGTGAAGTAGGCCAAGCCATAGAAAGCAATGACCTACCAGCGGCAAGTTCAGTTCTCG
GAGGAAGCACAGAGACAGAATGGCTCAAGAAGGCCAGCCTTGCATTGATGAAGCTGACTTCAAGTCCTGAAGAAAAGACT
GAGGTGGACACGTTTAATTCATCAGTGGCTTCATTAATATCATCAGTCACAAGGAATGACATTGAATCTTCCAAAGTCGC
TTTCATCACATCAGCTAGCGCTTTTGAGAGATGGACAACCTTAACAGGGCTCGTCGAAGTGCTCNA




Most similar to sp|O22773|TL16_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O22773|TL16_ARATH Thylakoid lumenal 16.5 kDa protein,
           chloroplastic OS=Arabidopsis thaliana GN=At4g02530 PE=1
           SV=3
          Length = 216

 Score =  209 bits (533), Expect = 1e-53
 Identities = 108/169 (63%), Positives = 136/169 (80%), Gaps = 1/169 (0%)
 Frame = +3

Query: 201 RRGLAISLVTTSFLFSLGGGEKSG-GANAAILEADDDVELLEKVKKDRKKRLERQGIINS 377
           RR L++  +++     L   ++    ANAAILEADDD ELLEKVK+DRKKR+ERQ ++NS
Sbjct: 45  RRELSLGFMSSLVAIGLVSNDRRRHDANAAILEADDDEELLEKVKQDRKKRIERQAVLNS 104

Query: 378 SKTEKGYLQDLVYKLSEVGQAIESNDLPAASSVLGGSTETEWLKKASLALMKLTSSPEEK 557
           +  EKGYLQDLVYKLS+VGQAIE+NDLPAA  VLG   +TEW+K  +LA  KL++SPEE 
Sbjct: 105 AVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGIDTEWVKTVNLAFTKLSTSPEEN 164

Query: 558 TEVDTFNSSVASLISSVTRNDIESSKVAFITSASAFERWTTLTGLVEVL 704
           TEV+ FNSS+ASLI+SV +NDIESSK+AF++SA AFE+WTTLTGL+E L
Sbjct: 165 TEVEAFNSSLASLITSVNKNDIESSKLAFVSSAGAFEKWTTLTGLLEQL 213